I called Classic Airboats and they were out of their computer drawn polymer installation guide. I ended up talking to the person who installs the polymer on their boats. He was a great help. I'll pass on what I remember of the process, but be sure to check this out with a professional who does it all the time. I have only installed polymer once 4 to 5 years ago.
Two of us installed polymer on a 13'x7' Airgator, bottom and sides, an early 70's model. I took us 13 hours (2days 8&5hrs) to finish the job. Talk to a few people that have done it before you do the installation and you will get their ideas and their tricks of installation. It is always easier to install polymer when it is hot and sunny and polymer conforms better after it has been sitting in the Sun. Install the 3 screws in the lip first (see below), and then let it sit in the Sun until it becomes easier to work with. This isn't necessary, but it helps. It was a pointer I received after my installation. A heat gun also works for conforming the sheet.
We used three drills, one with the countersink bit (a 12 Volt Dewalt cordless drill with two good batteries and one always recharging)(Classic sells the bit with an adjustable depth collar), one 7/32"?(ask Classic what size) pilot hole drill bit(we used a 3/8" air drill),and one (1/2" air drill) with the screwdriver bit for the 1/4" machine screws. You need the moderate constant power of a 1/2" drill to drive the machine screw down below the highest surface of the countersunk polymer and into the aluminum. START SLOWLY and increase speed moderately until the screw bottoms out. The 1/4" stainless machine screw is threading into the 7/32" hole in the bottom. It's better to use a least one cordless and you can also use electric instead of air tools (air tools are lighter and easier to use if available). The least amount of power lines the better because when you get the hang of it, tangled cords slow you down. Two cords aren't too bad but three get tangled too easily.
Mark the AFT CENTER OF THE STERN LIP OF THE BOAT (this is your starting point), and MARK THE CENTER OF THE POLYMER ON THE STERN SIDE AND THE BOW SIDE. Square the polymer sheet to the stern lip of the boat. DRILL THE POLYMER AND LIP OF THE BOTTOM OF THE BOAT, COUNTERSINK POLYMER AND SCREW IN A MACHINE SCREW. Mark the polymer with a Sharpie marking pen 1 1/2" on either side of your first screw, the center screw(The center screw was a starting point). Don't use the center screw to make a row forward . Use the two outer screws to start your rows.). Install two more machine screws. Now you have 3 screws in the lip of your bottom. Now you will want to make a couple of measuring guages. I used trim pieces from the polymer approximately 2" x 3' & 2"x10'. Mark the short piece every 3" for the edges of the sheet and the long one every 6" for the inside measurements of the sheet. Those two outer screws are 3" apart and from now on you measure and mark every 3" on both sides on each screw.The measurements on either side of the center screw will be 1 1/2",(then add 3" each measurement out) 4 1/2", 7 1/12", 10 1/2", 13 1/2", 16 1/2", 19 1/2", 22 1/2", 25 1/2" 28 1/2", 31 1/2", 34 1/2", 40 1/2" and so on until you come to the third to last row, then you split the difference between the third to last row and the outer row to make the second to last row of screws. These measurements are for marking your drilling pattern. We spaced the screws in the center of the sheet 6" apart. You can now start marking your drilling pattern fore and aft by starting with the center mark at the bow, and using the same process of measuring from side to side. Now that you have both of the sheet ends marked, the fore and aft lines can be drawn and the drilling marks marked. We didn't mark all the drilling point grids at one time, We just marked one or two rows at a time so as not to smudge the marker and have to do double work.
IMPORTANT !!!! Always work from the center of the sheet (boat) going out towards the outside of the boat. Just start with your first 3 screws in the lip (don't use the center screw to make a row), finish those 2 rows and install a screw in the lip when you begin your next row. When you work this way the sheet is conforming flat to the bottom of the boat and you won't create highs and lows in the sheet. Trim the sheet as needed to conform to the bottom the way you want it to finish out,(need a carpenters plumb, skill saw and a 2x4 to put between the boat and polymer),this can be done towards the end or in the beginning and make allowances if you plan on installing side sheets. We also staggered the bolts from row to row. When you start a row, measure one row 3" from the lip screw and the next row measure 6" from the lip screw. If done this way you will have a closer pattern of machine screws and a tighter fit.
I would try the polymer before you modify your engine. Polymer and a good composite prop will surprise you ,and you might want to leave it as a direct drive.
I hope this helps and make sense. I stayed up way too late trying to make sense out of an old project, but it was fun.