I have never run hoop nets but looked on YouTube and can't see why they would be an issue if you had a big stable hull like a 16 or 18 RiverMaster or Kennedy. We originally built my boat to net fish the fall run in the creeks and backwaters. We put two cast netters up on the front. We fabricated a wood insert for them to stand on from plywood which has a small lip and it serves as a cull deck.
It is a fish getting machine !